bash
docker run -it ghcr.io/lgatto/book2:devel Rbook2
Package: book2
Authors: First Last [aut, cre]
Compiled: 2023-11-01
Package version: 0.98.0
R version: R version 4.3.1 (2023-06-16)
BioC version: 3.18
License: MIT + file LICENSE
Welcome
This is the landing page of the BiocBook entitled ….
This book introduces the reader to ….
Docker image
A Docker image built from this repository is available here:
Get started now 🎉
You can get access to all the packages used in this book in < 1 minute, using this command in a terminal:
RStudio Server
An RStudio Server instance can be initiated from the Docker image as follows:
bash
docker run \
--volume <local_folder>:<destination_folder> \
-e PASSWORD=OHCA \
-p 8787:8787 \
ghcr.io/lgatto/book2:develThe initiated RStudio Server instance will be available at https://localhost:8787.
Session info
Click to expand 👇
sessioninfo::session_info(
installed.packages()[,"Package"],
include_base = TRUE
)
## ─ Session info ────────────────────────────────────────────────────────────
## setting value
## version R version 4.3.1 (2023-06-16)
## os Ubuntu 22.04.3 LTS
## system x86_64, linux-gnu
## ui X11
## language (EN)
## collate C
## ctype en_US.UTF-8
## tz Etc/UTC
## date 2023-11-01
## pandoc 3.1.1 @ /usr/local/bin/ (via rmarkdown)
##
## ─ Packages ────────────────────────────────────────────────────────────────
## package * version date (UTC) lib source
## askpass 1.2.0 2023-09-03 [2] CRAN (R 4.3.1)
## base * 4.3.1 2023-10-19 [3] local
## base64enc 0.1-3 2015-07-28 [2] CRAN (R 4.3.1)
## BiocManager 1.30.22 2023-08-08 [2] CRAN (R 4.3.1)
## BiocStyle 2.30.0 2023-10-24 [2] Bioconductor
## BiocVersion 3.18.0 2023-04-25 [2] Bioconductor
## book2 0.98.0 2023-11-01 [1] local
## bookdown 0.36 2023-10-16 [2] CRAN (R 4.3.1)
## boot 1.3-28.1 2022-11-22 [3] CRAN (R 4.3.1)
## brew 1.0-8 2022-09-29 [2] CRAN (R 4.3.1)
## brio 1.1.3 2021-11-30 [2] CRAN (R 4.3.1)
## bslib 0.5.1 2023-08-11 [2] CRAN (R 4.3.1)
## cachem 1.0.8 2023-05-01 [2] CRAN (R 4.3.1)
## callr 3.7.3 2022-11-02 [2] CRAN (R 4.3.1)
## class 7.3-22 2023-05-03 [3] CRAN (R 4.3.1)
## cli 3.6.1 2023-03-23 [2] CRAN (R 4.3.1)
## clipr 0.8.0 2022-02-22 [2] CRAN (R 4.3.1)
## cluster 2.1.4 2022-08-22 [3] CRAN (R 4.3.1)
## codetools 0.2-19 2023-02-01 [3] CRAN (R 4.3.1)
## commonmark 1.9.0 2023-03-17 [2] CRAN (R 4.3.1)
## compiler 4.3.1 2023-10-19 [3] local
## cpp11 0.4.6 2023-08-10 [2] CRAN (R 4.3.1)
## crayon 1.5.2 2022-09-29 [2] CRAN (R 4.3.1)
## credentials 2.0.1 2023-09-06 [2] CRAN (R 4.3.1)
## curl 5.1.0 2023-10-02 [2] CRAN (R 4.3.1)
## datasets * 4.3.1 2023-10-19 [3] local
## desc 1.4.2 2022-09-08 [2] CRAN (R 4.3.1)
## devtools 2.4.5 2022-10-11 [2] CRAN (R 4.3.1)
## diffobj 0.3.5 2021-10-05 [2] CRAN (R 4.3.1)
## digest 0.6.33 2023-07-07 [2] CRAN (R 4.3.1)
## docopt 0.7.1 2020-06-24 [2] CRAN (R 4.3.1)
## downlit 0.4.3 2023-06-29 [2] CRAN (R 4.3.1)
## ellipsis 0.3.2 2021-04-29 [2] CRAN (R 4.3.1)
## evaluate 0.23 2023-11-01 [2] CRAN (R 4.3.1)
## fansi 1.0.5 2023-10-08 [2] CRAN (R 4.3.1)
## fastmap 1.1.1 2023-02-24 [2] CRAN (R 4.3.1)
## fontawesome 0.5.2 2023-08-19 [2] CRAN (R 4.3.1)
## foreign 0.8-85 2023-09-09 [2] CRAN (R 4.3.1)
## fs 1.6.3 2023-07-20 [2] CRAN (R 4.3.1)
## gert 2.0.0 2023-09-26 [2] CRAN (R 4.3.1)
## gh 1.4.0 2023-02-22 [2] CRAN (R 4.3.1)
## gitcreds 0.1.2 2022-09-08 [2] CRAN (R 4.3.1)
## glue 1.6.2 2022-02-24 [2] CRAN (R 4.3.1)
## graphics * 4.3.1 2023-10-19 [3] local
## grDevices * 4.3.1 2023-10-19 [3] local
## grid 4.3.1 2023-10-19 [3] local
## highr 0.10 2022-12-22 [2] CRAN (R 4.3.1)
## htmltools 0.5.6.1 2023-10-06 [2] CRAN (R 4.3.1)
## htmlwidgets 1.6.2 2023-03-17 [2] CRAN (R 4.3.1)
## httpuv 1.6.11 2023-05-11 [2] CRAN (R 4.3.1)
## httr 1.4.7 2023-08-15 [2] CRAN (R 4.3.1)
## httr2 0.2.3 2023-05-08 [2] CRAN (R 4.3.1)
## ini 0.3.1 2018-05-20 [2] CRAN (R 4.3.1)
## jquerylib 0.1.4 2021-04-26 [2] CRAN (R 4.3.1)
## jsonlite 1.8.7 2023-06-29 [2] CRAN (R 4.3.1)
## KernSmooth 2.23-22 2023-07-10 [2] CRAN (R 4.3.1)
## knitr 1.45 2023-10-30 [2] CRAN (R 4.3.1)
## later 1.3.1 2023-05-02 [2] CRAN (R 4.3.1)
## lattice 0.21-9 2023-10-01 [2] CRAN (R 4.3.1)
## lifecycle 1.0.3 2022-10-07 [2] CRAN (R 4.3.1)
## littler 0.3.18 2023-03-26 [2] CRAN (R 4.3.1)
## magrittr 2.0.3 2022-03-30 [2] CRAN (R 4.3.1)
## MASS 7.3-60 2023-05-04 [3] CRAN (R 4.3.1)
## Matrix 1.6-1.1 2023-09-18 [2] CRAN (R 4.3.1)
## memoise 2.0.1 2021-11-26 [2] CRAN (R 4.3.1)
## methods * 4.3.1 2023-10-19 [3] local
## mgcv 1.9-0 2023-07-11 [2] CRAN (R 4.3.1)
## mime 0.12 2021-09-28 [2] CRAN (R 4.3.1)
## miniUI 0.1.1.1 2018-05-18 [2] CRAN (R 4.3.1)
## nlme 3.1-163 2023-08-09 [2] CRAN (R 4.3.1)
## nnet 7.3-19 2023-05-03 [3] CRAN (R 4.3.1)
## openssl 2.1.1 2023-09-25 [2] CRAN (R 4.3.1)
## parallel 4.3.1 2023-10-19 [3] local
## pillar 1.9.0 2023-03-22 [2] CRAN (R 4.3.1)
## pkgbuild 1.4.2 2023-06-26 [2] CRAN (R 4.3.1)
## pkgconfig 2.0.3 2019-09-22 [2] CRAN (R 4.3.1)
## pkgdown 2.0.7 2022-12-14 [2] CRAN (R 4.3.1)
## pkgload 1.3.3 2023-09-22 [2] CRAN (R 4.3.1)
## praise 1.0.0 2015-08-11 [2] CRAN (R 4.3.1)
## preprocessCore 1.63.1 2023-05-02 [2] Bioconductor
## prettyunits 1.2.0 2023-09-24 [2] CRAN (R 4.3.1)
## processx 3.8.2 2023-06-30 [2] CRAN (R 4.3.1)
## profvis 0.3.8 2023-05-02 [2] CRAN (R 4.3.1)
## promises 1.2.1 2023-08-10 [2] CRAN (R 4.3.1)
## ps 1.7.5 2023-04-18 [2] CRAN (R 4.3.1)
## purrr 1.0.2 2023-08-10 [2] CRAN (R 4.3.1)
## R6 2.5.1 2021-08-19 [2] CRAN (R 4.3.1)
## ragg 1.2.6 2023-10-10 [2] CRAN (R 4.3.1)
## rappdirs 0.3.3 2021-01-31 [2] CRAN (R 4.3.1)
## rcmdcheck 1.4.0 2021-09-27 [2] CRAN (R 4.3.1)
## Rcpp 1.0.11 2023-07-06 [2] CRAN (R 4.3.1)
## rematch2 2.1.2 2020-05-01 [2] CRAN (R 4.3.1)
## remotes 2.4.2.1 2023-07-18 [2] CRAN (R 4.3.1)
## rlang 1.1.1 2023-04-28 [2] CRAN (R 4.3.1)
## rmarkdown 2.25 2023-09-18 [2] CRAN (R 4.3.1)
## roxygen2 7.2.3 2022-12-08 [2] CRAN (R 4.3.1)
## rpart 4.1.21 2023-10-09 [2] CRAN (R 4.3.1)
## rprojroot 2.0.3 2022-04-02 [2] CRAN (R 4.3.1)
## rstudioapi 0.15.0 2023-07-07 [2] CRAN (R 4.3.1)
## rversions 2.1.2 2022-08-31 [2] CRAN (R 4.3.1)
## sass 0.4.7 2023-07-15 [2] CRAN (R 4.3.1)
## sessioninfo 1.2.2 2021-12-06 [2] CRAN (R 4.3.1)
## shiny 1.7.5.1 2023-10-14 [2] CRAN (R 4.3.1)
## sourcetools 0.1.7-1 2023-02-01 [2] CRAN (R 4.3.1)
## spatial 7.3-17 2023-07-20 [2] CRAN (R 4.3.1)
## splines 4.3.1 2023-10-19 [3] local
## stats * 4.3.1 2023-10-19 [3] local
## stats4 4.3.1 2023-10-19 [3] local
## stringi 1.7.12 2023-01-11 [2] CRAN (R 4.3.1)
## stringr 1.5.0 2022-12-02 [2] CRAN (R 4.3.1)
## survival 3.5-7 2023-08-14 [2] CRAN (R 4.3.1)
## sys 3.4.2 2023-05-23 [2] CRAN (R 4.3.1)
## systemfonts 1.0.5 2023-10-09 [2] CRAN (R 4.3.1)
## tcltk 4.3.1 2023-10-19 [3] local
## testthat 3.2.0 2023-10-06 [2] CRAN (R 4.3.1)
## textshaping 0.3.7 2023-10-09 [2] CRAN (R 4.3.1)
## tibble 3.2.1 2023-03-20 [2] CRAN (R 4.3.1)
## tinytex 0.48 2023-10-13 [2] CRAN (R 4.3.1)
## tools 4.3.1 2023-10-19 [3] local
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## utils * 4.3.1 2023-10-19 [3] local
## vctrs 0.6.4 2023-10-12 [2] CRAN (R 4.3.1)
## waldo 0.5.1 2023-05-08 [2] CRAN (R 4.3.1)
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## withr 2.5.1 2023-09-26 [2] CRAN (R 4.3.1)
## xfun 0.41 2023-11-01 [2] CRAN (R 4.3.1)
## xml2 1.3.5 2023-07-06 [2] CRAN (R 4.3.1)
## xopen 1.0.0 2018-09-17 [2] CRAN (R 4.3.1)
## xtable 1.8-4 2019-04-21 [2] CRAN (R 4.3.1)
## yaml 2.3.7 2023-01-23 [2] CRAN (R 4.3.1)
## zip 2.3.0 2023-04-17 [2] CRAN (R 4.3.1)
##
## [1] /tmp/RtmpzIa4XJ/Rinsta34ef5d77
## [2] /usr/local/lib/R/site-library
## [3] /usr/local/lib/R/library
##
## ───────────────────────────────────────────────────────────────────────────