getHpaDate.RdObtain the data and release information of the Human Protein Atlas (HPA) sets distributed by `hpar`. See http://www.proteinatlas.org/about/releases for the HPA release history.
getHpaDate()A `character()` with the release information.
allHparData()
#> Title
#> 1 hpaCancer16.1
#> 2 hpaCancer
#> 3 hpaNormalTissue16.1
#> 4 hpaNormalTissue
#> 5 hpaSecretome
#> 6 hpaSubcellularLoc14
#> 7 hpaSubcellularLoc16.1
#> 8 hpaSubcellularLoc
#> 9 rnaConsensusTissue
#> 10 rnaFantomTissue
#> 11 rnaGeneCellLine16.1
#> 12 rnaGeneCellLine
#> 13 rnaGeneTissue21.0
#> 14 rnaGtexTissue
#> 15 rnaHpaTissue
#> Description
#> 1 Pathology data: Staining profiles for proteins in human tumor tissue (version 16.1).
#> 2 Pathology data: Staining profiles for proteins in human tumor tissue.
#> 3 Normal tissue data: Expression profiles for proteins in human tissues based on immunohistochemisty using tissue micro arrays (version 16.1)
#> 4 Normal tissue data: Expression profiles for proteins in human tissues based on immunohistochemisty using tissue micro arrays.
#> 5 Secretome data: Ensembl genes with at least one predicted secreted transcript according to HPA predictions.
#> 6 Subcellular location data: Subcellular location of proteins based on immunofluorescently stained cells (version 14).
#> 7 Subcellular location data: Subcellular location of proteins based on immunofluorescently stained cells (version 16.1).
#> 8 Subcellular location of proteins based on immunofluorescently stained cells.
#> 9 RNA consensus tissue gene data: Consensus transcript expression levels summarized per gene in 54 tissues based on transcriptomics data from HPA and GTEx.
#> 10 RNA FANTOM tissue gene data: Transcript expression levels summarized per gene in 60 tissues based on CAGE data
#> 11 RNA HPA cell line gene data: Transcript expression levels summarized per gene in 69 cell lines (version 16.1).
#> 12 RNA HPA cell line gene data: Transcript expression levels summarized per gene in 69 cell lines.
#> 13 RNA HPA tissue gene data: Transcript expression levels summarized per gene in 37 tissues based on RNA-seq (version 21.0)
#> 14 RNA GTEx tissue gene data: Transcript expression levels summarized per gene in 37 tissues based on RNA-seq
#> 15 RNA HPA tissue gene data: Transcript expression levels summarized per gene in 256 tissues based on RNA-seq.
#> BiocVersion Genome SourceType SourceUrl
#> 1 3.16 NA TSV https://www.proteinatlas.org/download
#> 2 3.16 NA TSV https://www.proteinatlas.org/download
#> 3 3.16 NA TSV https://www.proteinatlas.org/download
#> 4 3.16 NA TSV https://www.proteinatlas.org/download
#> 5 3.16 NA TSV https://www.proteinatlas.org/download
#> 6 3.16 NA TSV https://www.proteinatlas.org/download
#> 7 3.16 NA TSV https://www.proteinatlas.org/download
#> 8 3.16 NA TSV https://www.proteinatlas.org/download
#> 9 3.16 NA TSV https://www.proteinatlas.org/download
#> 10 3.16 NA TSV https://www.proteinatlas.org/download
#> 11 3.16 NA TSV https://www.proteinatlas.org/download
#> 12 3.16 NA TSV https://www.proteinatlas.org/download
#> 13 3.16 NA TSV https://www.proteinatlas.org/download
#> 14 3.16 NA TSV https://www.proteinatlas.org/download
#> 15 3.16 NA TSV https://www.proteinatlas.org/download
#> SourceVersion Species TaxonomyId Coordinate_1_based DataProvider
#> 1 16.1 Homo sapiens 9606 NA Human Protein Atlas
#> 2 21.0 Homo sapiens 9606 NA Human Protein Atlas
#> 3 16.1 Homo sapiens 9606 NA Human Protein Atlas
#> 4 21.0 Homo sapiens 9606 NA Human Protein Atlas
#> 5 21.0 Homo sapiens 9606 NA Human Protein Atlas
#> 6 14.0 Homo sapiens 9606 NA Human Protein Atlas
#> 7 16.1 Homo sapiens 9606 NA Human Protein Atlas
#> 8 21.0 Homo sapiens 9606 NA Human Protein Atlas
#> 9 21.0 Homo sapiens 9606 NA Human Protein Atlas
#> 10 21.0 Homo sapiens 9606 NA Human Protein Atlas
#> 11 16.1 Homo sapiens 9606 NA Human Protein Atlas
#> 12 21.0 Homo sapiens 9606 NA Human Protein Atlas
#> 13 21.0 Homo sapiens 9606 NA Human Protein Atlas
#> 14 21.0 Homo sapiens 9606 NA Human Protein Atlas
#> 15 21.0 Homo sapiens 9606 NA Human Protein Atlas
#> Maintainer RDataClass DispatchClass
#> 1 Laurent Gatto <laurent.gatto@uclouvain.be> data.frame Rda
#> 2 Laurent Gatto <laurent.gatto@uclouvain.be> data.frame Rda
#> 3 Laurent Gatto <laurent.gatto@uclouvain.be> data.frame Rda
#> 4 Laurent Gatto <laurent.gatto@uclouvain.be> data.frame Rda
#> 5 Laurent Gatto <laurent.gatto@uclouvain.be> data.frame Rda
#> 6 Laurent Gatto <laurent.gatto@uclouvain.be> data.frame Rda
#> 7 Laurent Gatto <laurent.gatto@uclouvain.be> data.frame Rda
#> 8 Laurent Gatto <laurent.gatto@uclouvain.be> data.frame Rda
#> 9 Laurent Gatto <laurent.gatto@uclouvain.be> data.frame Rda
#> 10 Laurent Gatto <laurent.gatto@uclouvain.be> data.frame Rda
#> 11 Laurent Gatto <laurent.gatto@uclouvain.be> data.frame Rda
#> 12 Laurent Gatto <laurent.gatto@uclouvain.be> data.frame Rda
#> 13 Laurent Gatto <laurent.gatto@uclouvain.be> data.frame Rda
#> 14 Laurent Gatto <laurent.gatto@uclouvain.be> data.frame Rda
#> 15 Laurent Gatto <laurent.gatto@uclouvain.be> data.frame Rda
#> RDataPath
#> 1 hpar/data/hpaCancer16.1.rda
#> 2 hpar/data/hpaCancer.rda
#> 3 hpar/data/hpaNormalTissue16.1.rda
#> 4 hpar/data/hpaNormalTissue.rda
#> 5 hpar/data/hpaSecretome.rda
#> 6 hpar/data/hpaSubcellularLoc14.rda
#> 7 hpar/data/hpaSubcellularLoc16.1.rda
#> 8 hpar/data/hpaSubcellularLoc.rda
#> 9 hpar/data/rnaConsensusTissue.rda
#> 10 hpar/data/rnaFantomTissue.rda
#> 11 hpar/data/rnaGeneCellLine16.1.rda
#> 12 hpar/data/rnaGeneCellLine.rda
#> 13 hpar/data/rnaGeneTissue21.0.rda
#> 14 hpar/data/rnaGtexTissue.rda
#> 15 hpar/data/rnaHpaTissue.rda
#> Tags
#> 1 ExperimentHub:ExperimentData:ReproducibleResearch:RepositoryData:CancerData:Homo_sapiens_Data:Proteome:Tissue
#> 2 ExperimentHub:ExperimentData:ReproducibleResearch:RepositoryData:CancerData:Homo_sapiens_Data:Proteome:Tissue
#> 3 ExperimentHub:ExperimentData:ReproducibleResearch:RepositoryData:CancerData:Homo_sapiens_Data:Proteome:Tissue
#> 4 ExperimentHub:ExperimentData:ReproducibleResearch:RepositoryData:CancerData:Homo_sapiens_Data:Proteome:Tissue
#> 5 ExperimentHub:ExperimentData:ReproducibleResearch:RepositoryData:CancerData:Homo_sapiens_Data:Proteome:Tissue
#> 6 ExperimentHub:ExperimentData:ReproducibleResearch:RepositoryData:CancerData:Homo_sapiens_Data:Proteome:Tissue
#> 7 ExperimentHub:ExperimentData:ReproducibleResearch:RepositoryData:CancerData:Homo_sapiens_Data:Proteome:Tissue
#> 8 ExperimentHub:ExperimentData:ReproducibleResearch:RepositoryData:CancerData:Homo_sapiens_Data:Proteome:Tissue
#> 9 ExperimentHub:ExperimentData:ReproducibleResearch:RepositoryData:CancerData:Homo_sapiens_Data:Proteome:Tissue
#> 10 ExperimentHub:ExperimentData:ReproducibleResearch:RepositoryData:CancerData:Homo_sapiens_Data:Proteome:Tissue
#> 11 ExperimentHub:ExperimentData:ReproducibleResearch:RepositoryData:CancerData:Homo_sapiens_Data:Proteome:Tissue
#> 12 ExperimentHub:ExperimentData:ReproducibleResearch:RepositoryData:CancerData:Homo_sapiens_Data:Proteome:Tissue
#> 13 ExperimentHub:ExperimentData:ReproducibleResearch:RepositoryData:CancerData:Homo_sapiens_Data:Proteome:Tissue
#> 14 ExperimentHub:ExperimentData:ReproducibleResearch:RepositoryData:CancerData:Homo_sapiens_Data:Proteome:Tissue
#> 15 ExperimentHub:ExperimentData:ReproducibleResearch:RepositoryData:CancerData:Homo_sapiens_Data:Proteome:Tissue
getHpaVersion()
#> version
#> "21.1"
getHpaDate()
#> date
#> "2022.05.31"
getHpaEnsembl()
#> ensembl
#> "103.38"