Function reference • RforProteomics

All functions
`RforProteomics()` `RProtVis()` `RProtViz()`	Opens the package vignettes
`downloadData()`	Download a file
`getPXD000001mzData()`	Download the PXD000001 mzTab file
`getPXD000001mzTab()`	Download the PXD000001 mzTab file
`getPXD000001mzXML()`	Download the PXD000001 mzXML file
`getPackagesInBiocView()`	Packages in a biocView
`getThermoHelaPRTC()`	Dowload Thermo Hela PRTC data
`TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzid`	An `mzIdentML` file
`new_ions()` `analyse()` `analyze()` `detect()` `spectrum()`	Create, analyse and detect ions
`packageDF()`	Package descriptions
`proteomicsPackages()` `massSpectrometryPackages()` `massSpectrometryDataPackages()`	Proteomics and MS biocView packages
`qnt`	PXD000001 example MSnSet

Reference