The following packages have been used to generate this document.
sessionInfo()## R version 4.0.0 (2020-04-24)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 18.04.5 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/libf77blas.so.3.10.3
## LAPACK: /usr/lib/x86_64-linux-gnu/atlas/liblapack.so.3.10.3
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_GB.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats4 parallel stats graphics grDevices utils datasets
## [8] methods base
##
## other attached packages:
## [1] proDA_1.4.0 magrittr_2.0.1 MSqRob_0.7.7
## [4] lme4_1.1-26 Matrix_1.2-18 ggrepel_0.9.0
## [7] forcats_0.5.0 stringr_1.4.0 purrr_0.3.4
## [10] readr_1.4.0 tidyr_1.1.2 tibble_3.0.4
## [13] tidyverse_1.3.0 limma_3.46.0 mzID_1.28.0
## [16] dplyr_1.0.2 ggplot2_3.3.3 rgl_0.103.5
## [19] msdata_0.30.0 rpx_1.99.2 RforProteomics_1.27.1
## [22] MSnID_1.24.0 gridExtra_2.3 lattice_0.20-41
## [25] AnnotationHub_2.22.0 BiocFileCache_1.14.0 dbplyr_2.0.0
## [28] MSnbase_2.17.4 ProtGenerics_1.23.6 S4Vectors_0.28.1
## [31] Biobase_2.50.0 BiocGenerics_0.36.0 mzR_2.24.1
## [34] Rcpp_1.0.5 BiocStyle_2.18.1
##
## loaded via a namespace (and not attached):
## [1] readxl_1.3.1 backports_1.2.1
## [3] gmm_1.6-5 plyr_1.8.6
## [5] splines_4.0.0 BiocParallel_1.24.1
## [7] crosstalk_1.1.0.1 GenomeInfoDb_1.26.2
## [9] digest_0.6.27 msmbstyle_0.0.11
## [11] foreach_1.5.1 htmltools_0.5.0
## [13] fansi_0.4.1 memoise_1.1.0
## [15] doParallel_1.0.16 Biostrings_2.58.0
## [17] modelr_0.1.8 matrixStats_0.57.0
## [19] R.utils_2.10.1 sandwich_3.0-0
## [21] imputeLCMD_2.0 colorspace_2.0-0
## [23] rvest_0.3.6 blob_1.2.1
## [25] rappdirs_0.3.1 haven_2.3.1
## [27] xfun_0.19 crayon_1.3.4
## [29] RCurl_1.98-1.2 jsonlite_1.7.2
## [31] graph_1.68.0 impute_1.64.0
## [33] zoo_1.8-8 iterators_1.0.13
## [35] glue_1.4.2 gtable_0.3.0
## [37] zlibbioc_1.36.0 XVector_0.30.0
## [39] webshot_0.5.2 DelayedArray_0.16.0
## [41] R.cache_0.14.0 scales_1.1.1
## [43] mvtnorm_1.1-1 vsn_3.58.0
## [45] DBI_1.1.0 miniUI_0.1.1.1
## [47] xtable_1.8-4 bit_4.0.4
## [49] preprocessCore_1.52.1 MsCoreUtils_1.3.2
## [51] htmlwidgets_1.5.3 httr_1.4.2
## [53] gplots_3.1.1 ellipsis_0.3.1
## [55] pkgconfig_2.0.3 XML_3.99-0.5
## [57] R.methodsS3_1.8.1 farver_2.0.3
## [59] tidyselect_1.1.0 labeling_0.4.2
## [61] rlang_0.4.10 manipulateWidget_0.10.1
## [63] reshape2_1.4.4 later_1.1.0.1
## [65] AnnotationDbi_1.52.0 cellranger_1.1.0
## [67] munsell_0.5.0 biocViews_1.58.1
## [69] BiocVersion_3.12.0 tools_4.0.0
## [71] cli_2.2.0 generics_0.1.0
## [73] RSQLite_2.2.1 broom_0.7.3
## [75] evaluate_0.14 fastmap_1.0.1
## [77] yaml_2.2.1 fs_1.5.0
## [79] knitr_1.30 bit64_4.0.5
## [81] caTools_1.18.0 ncdf4_1.17
## [83] RBGL_1.66.0 nlme_3.1-151
## [85] mime_0.9 R.oo_1.24.0
## [87] xml2_1.3.2 compiler_4.0.0
## [89] rstudioapi_0.13 curl_4.3
## [91] png_0.1-7 interactiveDisplayBase_1.28.0
## [93] affyio_1.60.0 reprex_0.3.0
## [95] statmod_1.4.35 stringi_1.5.3
## [97] ps_1.5.0 highr_0.8
## [99] pRolocdata_1.28.0 nloptr_1.2.2.2
## [101] tmvtnorm_1.4-10 vctrs_0.3.6
## [103] norm_1.0-9.5 pillar_1.4.7
## [105] lifecycle_0.2.0 RUnit_0.4.32
## [107] BiocManager_1.30.10 MALDIquant_1.19.3
## [109] data.table_1.13.4 bitops_1.0-6
## [111] GenomicRanges_1.42.0 httpuv_1.5.4
## [113] R6_2.5.0 pcaMethods_1.82.0
## [115] affy_1.68.0 bookdown_0.21
## [117] promises_1.1.1 KernSmooth_2.23-18
## [119] IRanges_2.24.1 codetools_0.2-16
## [121] boot_1.3-25 MASS_7.3-53
## [123] gtools_3.8.2 assertthat_0.2.1
## [125] SummarizedExperiment_1.20.0 withr_2.3.0
## [127] GenomeInfoDbData_1.2.4 hms_0.5.3
## [129] grid_4.0.0 minqa_1.2.4
## [131] rmarkdown_2.6 MatrixGenerics_1.2.0
## [133] lubridate_1.7.9.2 shiny_1.5.0Page built: 2021-01-12