Data for exercise 3

Source: R/data.R

A QFeatures object that has been generated to run exercise 3. It was generated from the v02-scp.Rmd vignette that replicates the SCoPE2 data processing workflow for batch LCB3 up to the QC and filtering of single-cells based on the CV. This dataset can be used to demonstrate the use of subsetByColData.

lcb3_3 contains 49 assays:

  • Assay 1-24: PSM data for 24 MS runs

  • Assay 25-48: aggregated peptide data for 24 MS runs

  • Assay 49: joined peptide data containing the sample of all 24 MS runs

data("lcb3_3")

Format

An object of class QFeatures of length 49.

See also

Other exercise datasets are available: lcb3_1, lcb3_2, lcb3_4, lcb3_5.