A QFeatures object that has been generated to run exercise 4. It was generated
from the v02-scp.Rmd vignette that replicates the SCoPE2 data
processing workflow for batch LCB3 up to batch correction. This
dataset can be used to demonstrate how to add
SingleCellExperiment objects as new assay in a QFeatures
object and create links with a parent assay.
lcb3_4 contains 55 assays:
Assay 1-24: PSM data for 24 MS runs
Assay 25-48: aggregated peptide data for 24 MS runs
Assay 49: joined peptide data containing the sample of all 24 MS runs
Assay 50: peptide data after a first normalization
Assay 51: peptide data after a second normalization
Assay 52: peptide data after log-transformation
Assay 53: aggregated protein data
Assay 54: protein data after a first normalization
Assay 55: protein data after a second normalization and imputation of missing data
sce corresponds to Assay 55 after batch correction using ComBat.
data("lcb3_4")
An object of class QFeatures of length 55.