This function retrieves a list of organelle markers or, if no species
is provided, prints a description of available marker sets. The markers can
be added to and MSnSet using the addMarkers
function. Several marker version are provided (see Details for additional
information).
Value
Prints a description of the available marker lists if species
is missing or a named character with organelle markers.
Details
Version 1 of the markers have been contributed by various members of the
Cambridge Centre for Proteomics, in particular Dr Dan Nightingale for yeast,
Dr Andy Christoforou and Dr Claire Mulvey for human, Dr Arnoud Groen for
Arabodopsis and Dr Claire Mulvey for mouse. In addition, original (curated)
markers from the pRolocdata datasets have been extracted (see
pRolocdata for details and references). Curation involved
verification of publicly available subcellular localisation annotation based
on the curators knowledge of the organelles/proteins considered and tracing
the original statement in the literature.
Version 2 of the markers (current default) have been updated by Charlotte Hutchings from the Cambridge Centre for Proteomics. Reference species marker sets are the same as those in version 1 with minor corrections and an updated naming system. Version 2 also contains additional marker sets from spatial proteomics publications. References for the source publications are provided below:
Geladaki, A., Britovsek, N.K., Breckels, L.M., Smith, T.S., Vennard, O.L., Mulvey, C.M., Crook, O.M., Gatto, L. and Lilley, K.S. (2019) Combining LOPIT with differential ultracentrifugation for high-resolution spatial proteomics. Nature Communications. 10 (1). doi:10.1038/s41467-018-08191-w
Christopher, J.A., Breckels, L.M., Crook, O.M., Vazquez–Chantada, M., Barratt, D. and Lilley, K.S. (2024) Global proteomics indicates subcellular-specific anti-ferroptotic responses to ionizing radiation.p.2024.09.12.611851. doi:10.1101/2024.09.12.611851
Itzhak, D.N., Tyanova, S., Cox, J. and Borner, G.H. (2016) Global, quantitative and dynamic mapping of protein subcellular localization. eLife. 5. doi:10.7554/elife.16950
Villanueva, E., Smith, T., Pizzinga, M., Elzek, M., Queiroz, R.M.L., Harvey, R.F., Breckels, L.M., Crook, O.M., Monti, M., Dezi, V., Willis, A.E. and Lilley, K.S. (2023) System-wide analysis of RNA and protein subcellular localization dynamics. Nature Methods. 1-12. doi:10.1038/s41592-023-02101-9
Christoforou, A., Mulvey, C.M., Breckels, L.M., Geladaki, A., Hurrell, T., Hayward, P.C., Naake, T., Gatto, L., Viner, R., Arias, A.M. and Lilley, K.S. (2016) A draft map of the mouse pluripotent stem cell spatial proteome. Nature Communications. 7 (1). doi:10.1038/ncomms9992
Barylyuk, K., Koreny, L., Ke, H., Butterworth, S., Crook, O.M., Lassadi, I., Gupta, V., Tromer, E., Mourier, T., Stevens, T.J., Breckels, L.M., Pain, A., Lilley, K.S. and Waller, R.F. (2020) A Comprehensive Subcellular Atlas of the Toxoplasma Proteome via hyperLOPIT Provides Spatial Context for Protein Functions. Cell Host and Microbe. 28 (5), 752-766.e9. doi:10.1016/j.chom.2020.09.011
Moloney, N.M., Barylyuk, K., Tromer, E., Crook, O.M., Breckels, L.M., Lilley, K.S., Waller, R.F. and MacGregor, P. (2023) Mapping diversity in African trypanosomes using high resolution spatial proteomics. Nature Communications. 14 (1), 4401. doi:10.1038/s41467-023-40125-z
Note: These markers are provided as a starting point to generate reliable sets of organelle markers but still need to be verified against any new data in the light of the quantitative data and the study conditions.
See also
addMarkers to add markers to an MSnSet and
markers for more information about marker encoding.
Examples
pRolocmarkers()
#> 14 marker lists (version 2) available:
#> Arabidopsis thaliana [atha]:
#> Ids: TAIR, 543 markers
#> Drosophila melanogaster [dmel]:
#> Ids: Uniprot, 179 markers
#> Gallus gallus [ggal]:
#> Ids: IPI, 102 markers
#> Homo sapiens [hsap]:
#> Ids: Uniprot, 872 markers
#> Homo sapiens [hsap_christopher]:
#> Ids: Uniprot, 1509 markers
#> Homo sapiens [hsap_geladaki]:
#> Ids: Uniprot, 579 markers
#> Homo sapiens [hsap_itzhak]:
#> Ids: Uniprot, 1076 markers
#> Homo sapiens [hsap_villaneuva]:
#> Ids: Uniprot, 682 markers
#> Mus musculus [mmus]:
#> Ids: Uniprot, 937 markers
#> Mus musculus [mmus_christoforou]:
#> Ids: Uniprot, 922 markers
#> Saccharomyces cerevisiae [scer_sgd]:
#> Ids: SGD, 259 markers
#> Saccharomyces cerevisiae [scer_uniprot]:
#> Ids: Uniprot, 259 markers
#> Toxoplasma gondii [toxo_barylyuk]:
#> Ids: ToxoDB gene identifier, 718 markers
#> Trypanosoma brucei [tryp_moloney]:
#> Ids: TriTrypDB gene identifier, 891 markers
pRolocmarkers("hsap")
#> P08865 P0CW22 P15880
#> "40S Ribosome" "40S Ribosome" "40S Ribosome"
#> P22090 P23396 P25398
#> "40S Ribosome" "40S Ribosome" "40S Ribosome"
#> P39019 P42677 P46781
#> "40S Ribosome" "40S Ribosome" "40S Ribosome"
#> P46782 P46783 P60866
#> "40S Ribosome" "40S Ribosome" "40S Ribosome"
#> P61247 P62081 P62241
#> "40S Ribosome" "40S Ribosome" "40S Ribosome"
#> P62244 P62249 P62263
#> "40S Ribosome" "40S Ribosome" "40S Ribosome"
#> P62266 P62269 P62273
#> "40S Ribosome" "40S Ribosome" "40S Ribosome"
#> P62277 P62280 P62701
#> "40S Ribosome" "40S Ribosome" "40S Ribosome"
#> P62753 P62841 P62847-2
#> "40S Ribosome" "40S Ribosome" "40S Ribosome"
#> P62851 P62854 P62857
#> "40S Ribosome" "40S Ribosome" "40S Ribosome"
#> P62861 P62979 P63220
#> "40S Ribosome" "40S Ribosome" "40S Ribosome"
#> P05386 P05387 P05388
#> "60S Ribosome" "60S Ribosome" "60S Ribosome"
#> P18077 P18124 P18621
#> "60S Ribosome" "60S Ribosome" "60S Ribosome"
#> P26373 P27635 P30050
#> "60S Ribosome" "60S Ribosome" "60S Ribosome"
#> P32969 P35268 P36578
#> "60S Ribosome" "60S Ribosome" "60S Ribosome"
#> P39023 P40429 P42766
#> "60S Ribosome" "60S Ribosome" "60S Ribosome"
#> P46776 P46777 P46778
#> "60S Ribosome" "60S Ribosome" "60S Ribosome"
#> P46779 P47914 P49207
#> "60S Ribosome" "60S Ribosome" "60S Ribosome"
#> P50914 P61254 P61313
#> "60S Ribosome" "60S Ribosome" "60S Ribosome"
#> P61353 P61513 P61927
#> "60S Ribosome" "60S Ribosome" "60S Ribosome"
#> P62424 P62750 P62829
#> "60S Ribosome" "60S Ribosome" "60S Ribosome"
#> P62888 P62899 P62906
#> "60S Ribosome" "60S Ribosome" "60S Ribosome"
#> P62910 P62913-2 P62917
#> "60S Ribosome" "60S Ribosome" "60S Ribosome"
#> P62987 P63173 P83731
#> "60S Ribosome" "60S Ribosome" "60S Ribosome"
#> P83881 P84098 Q02543
#> "60S Ribosome" "60S Ribosome" "60S Ribosome"
#> Q02878 Q07020 Q969Q0
#> "60S Ribosome" "60S Ribosome" "60S Ribosome"
#> Q9Y3U8 Q01518 P13796
#> "60S Ribosome" "Actin Cytoskeleton" "Actin Cytoskeleton"
#> P63261 P28289 O15143
#> "Actin Cytoskeleton" "Actin Cytoskeleton" "Actin Cytoskeleton"
#> O15144 O15145 O15511
#> "Actin Cytoskeleton" "Actin Cytoskeleton" "Actin Cytoskeleton"
#> O75369 O75369-8 P06753
#> "Actin Cytoskeleton" "Actin Cytoskeleton" "Actin Cytoskeleton"
#> P06753-2 P06753-3 P06753-5
#> "Actin Cytoskeleton" "Actin Cytoskeleton" "Actin Cytoskeleton"
#> P09493 P09493-10 P09493-5
#> "Actin Cytoskeleton" "Actin Cytoskeleton" "Actin Cytoskeleton"
#> P12814 P23528 P47755
#> "Actin Cytoskeleton" "Actin Cytoskeleton" "Actin Cytoskeleton"
#> P47756 P47756-2 P52907
#> "Actin Cytoskeleton" "Actin Cytoskeleton" "Actin Cytoskeleton"
#> P59998 P60709 P60981-2
#> "Actin Cytoskeleton" "Actin Cytoskeleton" "Actin Cytoskeleton"
#> P61158 P61160 P67936
#> "Actin Cytoskeleton" "Actin Cytoskeleton" "Actin Cytoskeleton"
#> P68032 Q16658 Q562R1
#> "Actin Cytoskeleton" "Actin Cytoskeleton" "Actin Cytoskeleton"
#> Q92747 Q9BPX5 Q9BR76
#> "Actin Cytoskeleton" "Actin Cytoskeleton" "Actin Cytoskeleton"
#> Q9NYL9 Q9NZ32 Q9NZR1
#> "Actin Cytoskeleton" "Actin Cytoskeleton" "Actin Cytoskeleton"
#> Q9P1U1-3 Q9Y281 Q9Y4G6
#> "Actin Cytoskeleton" "Actin Cytoskeleton" "Actin Cytoskeleton"
#> P06753-6 Q14847 P07737
#> "Actin Cytoskeleton" "Actin Cytoskeleton" "Actin Cytoskeleton"
#> Q9UJW0 P34932 P22102
#> "Actin Cytoskeleton" "Cytosol" "Cytosol"
#> Q8TCU6 O60841 Q12882
#> "Cytosol" "Cytosol" "Cytosol"
#> P49915-2 Q04446 Q6XQN6
#> "Cytosol" "Cytosol" "Cytosol"
#> O43847 Q06210-2 Q3KQV9
#> "Cytosol" "Cytosol" "Cytosol"
#> O14841 P19971 Q16543
#> "Cytosol" "Cytosol" "Cytosol"
#> P36871 Q9Y617 P60891
#> "Cytosol" "Cytosol" "Cytosol"
#> P16152 Q9HAB8 Q96KP4
#> "Cytosol" "Cytosol" "Cytosol"
#> P32119 Q9NR45 P19623
#> "Cytosol" "Cytosol" "Cytosol"
#> P53602 O43765 P29218
#> "Cytosol" "Cytosol" "Cytosol"
#> O95336 P16930 P08243-2
#> "Cytosol" "Cytosol" "Cytosol"
#> P34949 Q9HA64 P49593
#> "Cytosol" "Cytosol" "Cytosol"
#> P61081 P00492 Q9P2T1
#> "Cytosol" "Cytosol" "Cytosol"
#> Q15274 O95394 Q9H773
#> "Cytosol" "Cytosol" "Cytosol"
#> P29762 Q6IA69 Q14376
#> "Cytosol" "Cytosol" "Cytosol"
#> P09467 Q96AT9 Q13630
#> "Cytosol" "Cytosol" "Cytosol"
#> Q9H8S9 Q96BN8 P37837
#> "Cytosol" "Cytosol" "Cytosol"
#> P48637 Q9NR50 O75822
#> "Cytosol" "Cytosol" "Cytosol"
#> A0AVT1 P15170-2 P31153
#> "Cytosol" "Cytosol" "Cytosol"
#> Q04760 P50225 P18440
#> "Cytosol" "Cytosol" "Cytosol"
#> P51570 Q9BRA2 P50452
#> "Cytosol" "Cytosol" "Cytosol"
#> A6NDG6 Q9NRX4 Q9BQC3
#> "Cytosol" "Cytosol" "Cytosol"
#> O14732 Q9H2P9 O43175
#> "Cytosol" "Cytosol" "Cytosol"
#> Q9NT62 P52788 P07741
#> "Cytosol" "Cytosol" "Cytosol"
#> P49588 P09488 P49591
#> "Cytosol" "Cytosol" "Cytosol"
#> P49589 Q96C23 P49902
#> "Cytosol" "Cytosol" "Cytosol"
#> Q7L5D6 P30711 Q9UPN7
#> "Cytosol" "Cytosol" "Cytosol"
#> Q9NYU2-2 Q5JRA6 P13667
#> "ER" "ER" "ER"
#> P30101 P07237 P16615
#> "ER" "ER" "ER"
#> P04843 P16435 P08240
#> "ER" "ER" "ER"
#> O60568 P27824 Q12797
#> "ER" "ER" "ER"
#> Q8NBJ5 Q15084-3 Q9UGP8
#> "ER" "ER" "ER"
#> P48449 Q13438-4 Q02809
#> "ER" "ER" "ER"
#> O95479 Q9H0X9-2 Q13724
#> "ER" "ER" "ER"
#> O15320-8 Q14571 O75477
#> "ER" "ER" "ER"
#> Q9BS26 Q7Z2K6 P14314-2
#> "ER" "ER" "ER"
#> P30040 P50454 Q8NBS9
#> "ER" "ER" "ER"
#> Q9Y4P3 Q9BPW9 Q9BZQ6-2
#> "ER" "ER" "ER"
#> P07099 O15269 Q16850
#> "ER" "ER" "ER"
#> O15270 Q14554 Q969N2-5
#> "ER" "ER" "ER"
#> Q96JJ7 Q969V3-2 Q92611
#> "ER" "ER" "ER"
#> Q6UWW8 Q6P1M0 P39656
#> "ER" "ER" "ER"
#> Q9BT09 Q96S52 O00469
#> "ER" "ER" "ER"
#> Q86UL3 Q15293 O95302
#> "ER" "ER" "ER"
#> Q96DZ1 Q15005 Q643R3
#> "ER" "ER" "ER"
#> Q9H3N1 Q8NBM4 O43292
#> "ER" "ER" "ER"
#> Q9H488 O95881 Q9BU23-2
#> "ER" "ER" "ER"
#> Q6IAN0 Q8TC12 Q9UBM7
#> "ER" "ER" "ER"
#> P61619 Q9NZ01 P26885
#> "ER" "ER" "ER"
#> Q9H6R6-2 Q99442 P60468
#> "ER" "ER" "ER"
#> Q92604 O00400 Q86TM6-2
#> "ER" "ER" "ER"
#> P61009 Q9P0I2 Q15011-3
#> "ER" "ER" "ER"
#> Q9BV94-2 Q9UNW1 P43307
#> "ER" "ER" "ER"
#> O75298-3 Q8N5M9 Q96HR9
#> "ER" "ER" "ER"
#> Q96E22 O75845 Q9P2X0
#> "ER" "ER" "ER"
#> Q6Y288 Q9BQB6 Q8IYK4
#> "ER" "ER" "ER"
#> Q7Z4H8 O15460 O95470
#> "ER" "ER" "ER"
#> Q2TAA5 Q8TCJ2 O60476
#> "ER" "ER" "Golgi"
#> O75063 P26572 Q10469
#> "Golgi" "Golgi" "Golgi"
#> Q10472 Q14789 Q14789-2
#> "Golgi" "Golgi" "Golgi"
#> Q14789-4 Q16706 Q5SRI9
#> "Golgi" "Golgi" "Golgi"
#> Q7LGA3 Q8TBA6 Q8TBA6-2
#> "Golgi" "Golgi" "Golgi"
#> Q9NX62 Q9NXS2 Q9NY97
#> "Golgi" "Golgi" "Golgi"
#> Q9NY97-2 Q9P2E5 Q495W5-2
#> "Golgi" "Golgi" "Golgi"
#> A6NKF9 Q9BYC5 O94766
#> "Golgi" "Golgi" "Golgi"
#> P49641 Q8NBZ7 Q8NEW0
#> "Golgi" "Golgi" "Golgi"
#> O14653 O14653-3 P22083
#> "Golgi" "Golgi" "Golgi"
#> Q13948 Q86SF2 P33908
#> "Golgi" "Golgi" "Golgi"
#> Q8NCL4 O00461 Q8N4A0
#> "Golgi" "Golgi" "Golgi"
#> O00115 O00115-2 O00462
#> "Lysosome" "Lysosome" "Lysosome"
#> O00754 P04062-4 P04066
#> "Lysosome" "Lysosome" "Lysosome"
#> P06865 P07339 P07602
#> "Lysosome" "Lysosome" "Lysosome"
#> P07686 P07858 P09668
#> "Lysosome" "Lysosome" "Lysosome"
#> P10253 P10619 P10619-2
#> "Lysosome" "Lysosome" "Lysosome"
#> P15586 P17050 P34059
#> "Lysosome" "Lysosome" "Lysosome"
#> P38571 P38571-2 P43234
#> "Lysosome" "Lysosome" "Lysosome"
#> Q13571 Q14108 Q6ZP29
#> "Lysosome" "Lysosome" "Lysosome"
#> Q6ZP29-2 Q8NBJ9 Q9NUN5
#> "Lysosome" "Lysosome" "Lysosome"
#> Q9NUN5-3 Q9UBX1 Q9UHL4
#> "Lysosome" "Lysosome" "Lysosome"
#> Q8WWB7-2 O14773 Q9Y646
#> "Lysosome" "Lysosome" "Lysosome"
#> P35475 Q8NCC3 Q9HAT2-2
#> "Lysosome" "Lysosome" "Lysosome"
#> Q02083-2 Q01459 Q96RQ9
#> "Lysosome" "Lysosome" "Lysosome"
#> Q68CP4-2 P15289 P54802
#> "Lysosome" "Lysosome" "Lysosome"
#> P40939 Q13423 P43304
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> O60313-2 Q99798 Q3SY69
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> Q12931-2 Q02218 Q5JTZ9
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> P28331-4 Q5JRX3 Q9Y6N5
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> P49411 P00367 O94826
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> O95202 P09622 Q16822
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> P31930 P23786 P31040
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> P23368 P24752 P49448
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> P05091 P56181-2 P22695
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> Q10713 O43615 P22033
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> Q6NUK1 P49821-2 Q02252-2
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> P30837 P13804 P42765
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> O75390 P10515 P22570
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> Q96CM8-3 P12694 P30084
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> O75306 P55809 O00411
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> P50213 Q00325-2 O75439
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> O00330 P04181 P30405
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> P26440 Q9Y305-2 P11182
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> Q53H12 O75947 O95299
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> P53007 P22830 P16219
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> Q4G0N4 P13995 Q16134
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> P30038 P36542 O96008
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> P30042 P53597 Q02127
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> Q3ZCQ8 Q15118 P19404
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> P47985 O75027 O43837
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> Q8N0X4 Q6NVY1 P46199
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> P43897 P13073 P45954
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> O15382 P51649 P27144
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> O00217 P32322 P51553
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> P42126 P08574 O43181
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> Q15070-2 O75208 P62072
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> P18859 O43716 O60830
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> O75251 P10606 O75964
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> O43678 O14925 P00403
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> O75380 Q9Y5L4 O95169-3
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> Q9Y5J9 P30049 P09669
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> Q9Y5J7 Q99766 P15954
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> P10109 O95563 P23434
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> O95167 O43676 Q8IUX1-4
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> P0DJ07 O14521-2 O00142-2
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> Q9UKU7 Q8NI60 Q15031
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> Q9P0J1 Q9NUB1 O75127
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> O43819 P07919 O75879
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> O14874 Q16740 Q5HYK3
#> "Mitochondrion" "Mitochondrion" "Mitochondrion"
#> Q15120 Q5T160 P46013
#> "Mitochondrion" "Mitochondrion" "Nucleus"
#> P02545 Q14683 P20700
#> "Nucleus" "Nucleus" "Nucleus"
#> P11388 A6NHR9 Q9UQE7
#> "Nucleus" "Nucleus" "Nucleus"
#> O95347 Q9NTJ3 Q03252
#> "Nucleus" "Nucleus" "Nucleus"
#> O60264 Q9NRL2 Q9NTI5
#> "Nucleus" "Nucleus" "Nucleus"
#> Q5UIP0 Q29RF7 Q9Y5B9
#> "Nucleus" "Nucleus" "Nucleus"
#> Q9NR30 Q9GZR7 P24928
#> "Nucleus" "Nucleus" "Nucleus"
#> Q8N1F7 Q8NI27 P52948-5
#> "Nucleus" "Nucleus" "Nucleus"
#> O94776 Q92922 P11387
#> "Nucleus" "Nucleus" "Nucleus"
#> Q7LBC6 P16401 P42167
#> "Nucleus" "Nucleus" "Nucleus"
#> O95239 Q5SSJ5 Q9Y2U8
#> "Nucleus" "Nucleus" "Nucleus"
#> O60934 Q9H0A0 P10412
#> "Nucleus" "Nucleus" "Nucleus"
#> P43246 P16402 Q15424-4
#> "Nucleus" "Nucleus" "Nucleus"
#> Q08945 Q9NXV6 Q01826
#> "Nucleus" "Nucleus" "Nucleus"
#> P51532-5 P16403 Q8NFC6
#> "Nucleus" "Nucleus" "Nucleus"
#> P23193 O60341 P42167-2
#> "Nucleus" "Nucleus" "Nucleus"
#> Q86YP4 P42695 Q96ST3
#> "Nucleus" "Nucleus" "Nucleus"
#> O14981 O00567 P35251-2
#> "Nucleus" "Nucleus" "Nucleus"
#> Q92522 Q8WXF1 Q8WXI9
#> "Nucleus" "Nucleus" "Nucleus"
#> Q15059 Q5QJE6 P49711
#> "Nucleus" "Nucleus" "Nucleus"
#> O75694 Q96FV9 O60216
#> "Nucleus" "Nucleus" "Nucleus"
#> P35249 P35269 P62805
#> "Nucleus" "Nucleus" "Nucleus"
#> Q9NX58 Q15554 Q14807
#> "Nucleus" "Nucleus" "Nucleus"
#> Q969G3-2 O43684-2 Q13573
#> "Nucleus" "Nucleus" "Nucleus"
#> P85037 Q96SB8 P07305
#> "Nucleus" "Nucleus" "Nucleus"
#> O14647 P84243 P68431
#> "Nucleus" "Nucleus" "Nucleus"
#> P25490 Q03164-2 P35250
#> "Nucleus" "Nucleus" "Nucleus"
#> Q13769 Q9Y3T9 Q92925-3
#> "Nucleus" "Nucleus" "Nucleus"
#> P20585 Q9H8H0 P40937
#> "Nucleus" "Nucleus" "Nucleus"
#> Q13111 P40938 P18887
#> "Nucleus" "Nucleus" "Nucleus"
#> Q12824-2 P13984 Q9H9Y6
#> "Nucleus" "Nucleus" "Nucleus"
#> O43818 O15525 Q9Y3Y2-4
#> "Nucleus" "Nucleus" "Nucleus"
#> Q76FK4-4 O15047 Q13415
#> "Nucleus" "Nucleus" "Nucleus"
#> P0C0S5 Q8IXM2 Q13416
#> "Nucleus" "Nucleus" "Nucleus"
#> Q9UBD5 Q9P0W2-3 P52701
#> "Nucleus" "Nucleus" "Nucleus"
#> O75475 O60885 P26583
#> "Nucleus" "Nucleus" "Nucleus"
#> O15347 Q9H7Z6 Q9NVP1
#> "Nucleus" "Nucleus" "Nucleus"
#> Q9BVJ6 Q9BQ39 O15381
#> "Nucleus" "Nucleus" "Nucleus"
#> Q969X6 P55769 Q9NV31
#> "Nucleus" "Nucleus" "Nucleus"
#> Q9NPE3 O00116 O14832
#> "Nucleus" "Peroxisome" "Peroxisome"
#> O15254 O43808 O43933
#> "Peroxisome" "Peroxisome" "Peroxisome"
#> O75381 O75381-2 O96011
#> "Peroxisome" "Peroxisome" "Peroxisome"
#> P09110 P0C024 P28328
#> "Peroxisome" "Peroxisome" "Peroxisome"
#> P51659 Q08426 Q13608
#> "Peroxisome" "Peroxisome" "Peroxisome"
#> Q15067 Q15067-2 Q7Z412
#> "Peroxisome" "Peroxisome" "Peroxisome"
#> Q7Z412-2 Q86WA8 Q8WVX9
#> "Peroxisome" "Peroxisome" "Peroxisome"
#> Q9BY49 Q9NR77 Q9NUI1
#> "Peroxisome" "Peroxisome" "Peroxisome"
#> Q9P0Z9 Q9UKG9 Q9Y6I8
#> "Peroxisome" "Peroxisome" "Peroxisome"
#> O14734 O00161 O14786
#> "Peroxisome" "PM" "PM"
#> O14786-3 O14828-2 O14910
#> "PM" "PM" "PM"
#> O15031 O15394 O43760
#> "PM" "PM" "PM"
#> O60241-4 O60449 O60449-3
#> "PM" "PM" "PM"
#> O60462-4 O60637-3 O75019-2
#> "PM" "PM" "PM"
#> O75955 O75976 O94856
#> "PM" "PM" "PM"
#> O94910-2 O95297-2 O95502
#> "PM" "PM" "PM"
#> P01892 P04216 P05023
#> "PM" "PM" "PM"
#> P05026 P05106 P05362
#> "PM" "PM" "PM"
#> P05556 P06213-2 P06756-3
#> "PM" "PM" "PM"
#> P07204 P07949 P08195-2
#> "PM" "PM" "PM"
#> P08571 P08575-2 P08582
#> "PM" "PM" "PM"
#> P08648 P08754 P09543
#> "PM" "PM" "PM"
#> P10586-2 P11166 P11215
#> "PM" "PM" "PM"
#> P12318-2 P13164 P13591
#> "PM" "PM" "PM"
#> P13591-1 P13598 P13612
#> "PM" "PM" "PM"
#> P14209-3 P14415 P16070-18
#> "PM" "PM" "PM"
#> P16150 P16284-3 P17301
#> "PM" "PM" "PM"
#> P17677 P17813-2 P18084
#> "PM" "PM" "PM"
#> P19022 P19022-2 P19397
#> "PM" "PM" "PM"
#> P20020 P20020-6 P20138
#> "PM" "PM" "PM"
#> P20701 P20702 P21589
#> "PM" "PM" "PM"
#> P22794 P23229 P23634-4
#> "PM" "PM" "PM"
#> P26010 P26992 P27105
#> "PM" "PM" "PM"
#> P27701-2 P29323-2 P32004
#> "PM" "PM" "PM"
#> P32249 P32942 P32970
#> "PM" "PM" "PM"
#> P33527-4 P35222 P35408
#> "PM" "PM" "PM"
#> P35613-2 P36383 P38570
#> "PM" "PM" "PM"
#> P41597-2 P41732 P42857-2
#> "PM" "PM" "PM"
#> P43250-2 P46939 P48509
#> "PM" "PM" "PM"
#> P48960-2 P50895 P51674
#> "PM" "PM" "PM"
#> P54762 P55196-3 P63092
#> "PM" "PM" "PM"
#> P78552-2 P84095 P98155-2
#> "PM" "PM" "PM"
#> P98172 Q01650 Q01814
#> "PM" "PM" "PM"
#> Q03405 Q04941 Q08722
#> "PM" "PM" "PM"
#> Q12846 Q13449 Q13491
#> "PM" "PM" "PM"
#> Q13740-2 Q14254 Q14699
#> "PM" "PM" "PM"
#> Q14982-2 Q15262 Q15722
#> "PM" "PM" "PM"
#> Q16720 Q6GTX8-3 Q6IA17
#> "PM" "PM" "PM"
#> Q6UXK5 Q6X4W1 Q7Z2K8
#> "PM" "PM" "PM"
#> Q7Z3B1 Q7Z403-2 Q7Z6M3
#> "PM" "PM" "PM"
#> Q8IWK6-3 Q8IX19 Q8IYJ0
#> "PM" "PM" "PM"
#> Q8N0W4 Q8N2Q7 Q8N8Q9-2
#> "PM" "PM" "PM"
#> Q8N9M5 Q8NC67-3 Q8NFZ4
#> "PM" "PM" "PM"
#> Q8NHJ6-2 Q8NHJ6-3 Q8NHL6
#> "PM" "PM" "PM"
#> Q8TBP5 Q8TCZ2-6 Q92692
#> "PM" "PM" "PM"
#> Q92823-3 Q92854 Q92859-2
#> "PM" "PM" "PM"
#> Q96D96-4 Q96F46-2 Q96PE1
#> "PM" "PM" "PM"
#> Q96S97 Q99569 Q99569-2
#> "PM" "PM" "PM"
#> Q99571 Q99572-8 Q99795
#> "PM" "PM" "PM"
#> Q9BY67-5 Q9GZY6 Q9H2W1
#> "PM" "PM" "PM"
#> Q9H6B4 Q9H6X2-5 Q9H7M9
#> "PM" "PM" "PM"
#> Q9H813 Q9HAR2 Q9NPR9
#> "PM" "PM" "PM"
#> Q9NQS5 Q9NT68-2 Q9NW97
#> "PM" "PM" "PM"
#> Q9NZ94 Q9P121 Q9UBG0
#> "PM" "PM" "PM"
#> Q9UHW9-3 Q9UIW2 Q9Y219-2
#> "PM" "PM" "PM"
#> Q9Y287-2 Q9Y2J2-2 Q9Y624
#> "PM" "PM" "PM"
#> Q9Y639 Q9UIQ6 P78536
#> "PM" "PM" "PM"
#> P08311 Q9NWQ8 P04839
#> "PM" "PM" "PM"
#> P14384 P11234 P07333
#> "PM" "PM" "PM"
#> Q02487 P63218 P30825
#> "PM" "PM" "PM"
#> Q9NRM0 P41231 P32246
#> "PM" "PM" "PM"
#> Q9NPG4 Q13433 P98153
#> "PM" "PM" "PM"
#> P51511 P31641 Q99460
#> "PM" "PM" "Proteasome"
#> Q13200 O43242 P25786
#> "Proteasome" "Proteasome" "Proteasome"
#> O00232 Q15008 O00231
#> "Proteasome" "Proteasome" "Proteasome"
#> Q06323 O14818 Q9UNM6
#> "Proteasome" "Proteasome" "Proteasome"
#> P60900 P55036 P25789
#> "Proteasome" "Proteasome" "Proteasome"
#> Q9UL46 P20618 P25788-2
#> "Proteasome" "Proteasome" "Proteasome"
#> P28062 P61289 P25787
#> "Proteasome" "Proteasome" "Proteasome"
#> P28066 P49720 P49721
#> "Proteasome" "Proteasome" "Proteasome"
#> P51665 P40306 O75832
#> "Proteasome" "Proteasome" "Proteasome"
#> P28070 P28072 P48556
#> "Proteasome" "Proteasome" "Proteasome"
#> P28065 O00487 O95456-2
#> "Proteasome" "Proteasome" "Proteasome"
#> Q99436 P62195-2 P62191
#> "Proteasome" "Proteasome" "Proteasome"
#> P43686 P35998
#> "Proteasome" "Proteasome"
table(pRolocmarkers("hsap"))
#>
#> 40S Ribosome 60S Ribosome Actin Cytoskeleton Cytosol
#> 33 46 45 77
#> ER Golgi Lysosome Mitochondrion
#> 92 34 42 134
#> Nucleus PM Peroxisome Proteasome
#> 116 190 27 36
## Old markers
pRolocmarkers("hsap", version = "2")["Q9BPW9"]
#> Q9BPW9
#> "ER"
pRolocmarkers("hsap", version = "1")["Q9BPW9"]
#> Q9BPW9
#> "Endoplasmic Reticulum"