This function prints a textual description of the Gene Ontology evidence codes.
showGOEvidenceCodes()
getGOEvidenceCodes()These functions are used for their side effects of printing evidence codes and their description.
showGOEvidenceCodes()
#> GO Term Evidence Code
#> Experimental Evidence Codes
#> EXP: Inferred from Experiment
#> IDA: Inferred from Direct Assay
#> IPI: Inferred from Physical Interaction
#> IMP: Inferred from Mutant Phenotype
#> IGI: Inferred from Genetic Interaction
#> IEP: Inferred from Expression Pattern
#> Computational Analysis Evidence Codes
#> ISS: Inferred from Sequence or Structural Similarity
#> ISO: Inferred from Sequence Orthology
#> ISA: Inferred from Sequence Alignment
#> ISM: Inferred from Sequence Model
#> IGC: Inferred from Genomic Context
#> IBA: Inferred from Biological aspect of Ancestor
#> IBD: Inferred from Biological aspect of Descendant
#> IKR: Inferred from Key Residues
#> IRD: Inferred from Rapid Divergence
#> RCA: inferred from Reviewed Computational Analysis
#> Author Statement Evidence Codes
#> TAS: Traceable Author Statement
#> NAS: Non-traceable Author Statement
#> Curator Statement Evidence Codes
#> IC: Inferred by Curator
#> ND: No biological Data available
#> Automatically-assigned Evidence Codes
#> IEA: Inferred from Electronic Annotation
#> Obsolete Evidence Codes
#> NR: Not Recorded
getGOEvidenceCodes()
#> [1] "EXP" "IDA" "IPI" "IMP" "IGI" "IEP" "ISS" "ISO" "ISA" "ISM" "IGC" "IBA"
#> [13] "IBD" "IKR" "IRD" "RCA" "TAS" "NAS" "IC" "ND" "IEA" "NR"