synapterTinyData.RdInstead of using data to load the synapterTiny data set,
synapterTinyData will load it and initialise it for proper
downstream analysis, during which the 04_test_database.fasta
file, provided with the package and references inside the object
needs, to be accessed. However, as the exact location can not be known
in advance, the reference is updated with the file's correct local
path.
This data set has been generated with the Synapter
constructor. Note that the input data file sizes have been reduced by
depleting many rows (peptides and EMRTs) from the original
csv files.
In addition, several columns that where not necessary for
processing were also removed. As such, the data stored in
synapterTiny does not relect the data obtained when following
the section 'Preparing the input data' in the section, without however
affecting the processing and final results.
synapterTinyData()
A character vector with the data set name, "synapterTiny". Used
for its side effect of loading synapterTiny, an instance of
class Synapter, in .GlovalEnv.
Improving qualitative and quantitative performance for MSE-based label free proteomics, N.J. Bond, P.V. Shliaha, K.S. Lilley and L. Gatto, Journal of Proteome Research, 2013, in press.
The Effects of Travelling Wave Ion Mobility Separation on Data Independent Acquisition in Proteomics Studies, P.V. Shliaha, N.J. Bond, L. Gatto and K.S. Lilley, Journal of Proteome Research, 2013, in press.
synapterTinyData() synapterTiny#> Object of class "Synapter" #> Class version 2.0.0 #> Package version 1.99.0 #> Data files: #> + Identification pep file: 01_HDMSe_tiny.csv #> + Quantitation pep file: 02_MSe_tiny.csv #> + Quantitation Pep3DAMRT file: 03_Pep3D_tiny.csv #> + Fasta file: 04_test_database.fasta #> Log: #> [1] "Instance created on Wed Jun 6 23:37:36 2012" #> [2] "Read identification peptide data [5915,18]" #> [ 9 lines ] #> [12] "Filtered identification Random entries [4979,22]" #> [13] "Instance updated to synapter 1.99.0 on Sun Oct 16 16:47:24 2016"