MasterFdrResults-class
Class "MasterFdrResults"
"MasterFdrResults"
MasterPeptides-class
Class "MasterPeptides"
"MasterPeptides"
Synapter()
Class "Synapter"
createUniquePeptideDbRds()
Create an RDS file for the 'Unique Peptides Database'
estimateMasterFdr()
Computes FDR for all possible final peptide combinations
inspectPeptideScores()
Inspect peptide scores.
makeMaster()
Merges final peptide files
plotFragmentMatching
Plot fragment matching results.
requantify(<MSnSet>)
Intensity requantification
rescaleForTop3(<MSnSet>,<MSnSet>)
Rescale for TOP3
synapter-package
Combine label-free data for optimal identification and quantitation
synapterGuide()
Opens the 'synapter' vignette
synapterPlgsAgreement(<MSnSet>)
Synapter/PLGS Agreement
synapterTinyData()
Loads a small test data for the 'synapter' package
synergise()
Synergise identification and quantitation results
synergise2()