Posts by Tags

Bioconductor

MSnbase contributors 2010 - 2016 2017

4 minute read

MSnbase (or here on GitHub) (Gatto and Lilley, 2010) is one of my main software projects. I started working on the package when I moved to Cambridge in 2010....

CPU

MSnbase contributors 2010 - 2016 2017

4 minute read

MSnbase (or here on GitHub) (Gatto and Lilley, 2010) is one of my main software projects. I started working on the package when I moved to Cambridge in 2010....

Cambridge

Supporting those that support Open Research

6 minute read

The Office of Scholarly Communication (OSC) is the main structure that focuses on all matters related to open research at the University of Cambridge. It sta...

Open data info session

2 minute read

Earlier today, I attended an information session about Open Data presented by Marta Teperek from the Research data management team (@CamOpenData) at the Univ...

Elsevier

MSnbase

MSnbase contributors 2010 - 2016 2017

4 minute read

MSnbase (or here on GitHub) (Gatto and Lilley, 2010) is one of my main software projects. I started working on the package when I moved to Cambridge in 2010....

OSC

Open Research Project

Open Research Project, first thoughts

6 minute read

I am proud to be one of the participants in the Wellcome Trust Open Research Project (and here). The call was initially opened in December 2016 and was pitch...

OpenCon

I won’t be Bullied Into Bad Science!

6 minute read

This is the content of my talk at OpenConCam, the OpenCon satellite meeting in Cambridge, presented on the 16 November 2017. The slides are available here.

OpenConCam

I won’t be Bullied Into Bad Science!

6 minute read

This is the content of my talk at OpenConCam, the OpenCon satellite meeting in Cambridge, presented on the 16 November 2017. The slides are available here.

R

MSnbase contributors 2010 - 2016 2017

4 minute read

MSnbase (or here on GitHub) (Gatto and Lilley, 2010) is one of my main software projects. I started working on the package when I moved to Cambridge in 2010....

The Fibonacci Sequence

4 minute read

Here’s another post inspired by some python code, this time about the Fibonacci sequence by Stuart Mumford.

UCLouvain

Notes on interview questions

14 minute read

When it comes to interviews, I find it an extremely important to prepare a set of questions to identify what the overall message to pass across should be. An...

Wellcome Trust

Open Research Project, first thoughts

6 minute read

I am proud to be one of the participants in the Wellcome Trust Open Research Project (and here). The call was initially opened in December 2016 and was pitch...

academia

Notes on interview questions

14 minute read

When it comes to interviews, I find it an extremely important to prepare a set of questions to identify what the overall message to pass across should be. An...

Authorship, trust and open science

4 minute read

The publish or perish crisis has led to a situation where, quite understandably, being named on a paper is more important than the actual contribution. As a ...

analysis

Some brief advice on data analysis

3 minute read

Following up from the Quantitative Proteomics and Data Analysis course, where in animated a discussion table about Inspection, visualisation and analysis of ...

children

data

Research outputs management plans

1 minute read

During the talk about early career researchers’ view on modern and open scholarship I presented at the Research Data Management Forum 2017 in London, I descr...

Some brief advice on data analysis

3 minute read

Following up from the Quantitative Proteomics and Data Analysis course, where in animated a discussion table about Inspection, visualisation and analysis of ...

data champion

data champions

September data champions meeting

5 minute read

The Data Champions Initiative was set up as a way to promote best practice in terms of data management within the University departments and institutes, and ...

education

The steep learning curve

2 minute read

TL;DR The bloody steep learning curve is just a silly excuse and will only result in keeping [computer|programming|stats|…] literacy low in life sciences. St...

git

A gentle introduction to git and Github

10 minute read

Git is a command line-based distributed version control system. Version control system means that its goal is to track and record every change in a set of te...

Git Svn

2 minute read

From my old Git(hub) notes…

interview

Notes on interview questions

14 minute read

When it comes to interviews, I find it an extremely important to prepare a set of questions to identify what the overall message to pass across should be. An...

machine learning

open access

Supporting those that support Open Research

6 minute read

The Office of Scholarly Communication (OSC) is the main structure that focuses on all matters related to open research at the University of Cambridge. It sta...

Authorship, trust and open science

4 minute read

The publish or perish crisis has led to a situation where, quite understandably, being named on a paper is more important than the actual contribution. As a ...

open data

Supporting those that support Open Research

6 minute read

The Office of Scholarly Communication (OSC) is the main structure that focuses on all matters related to open research at the University of Cambridge. It sta...

Research outputs management plans

1 minute read

During the talk about early career researchers’ view on modern and open scholarship I presented at the Research Data Management Forum 2017 in London, I descr...

Authorship, trust and open science

4 minute read

The publish or perish crisis has led to a situation where, quite understandably, being named on a paper is more important than the actual contribution. As a ...

Open data info session

2 minute read

Earlier today, I attended an information session about Open Data presented by Marta Teperek from the Research data management team (@CamOpenData) at the Univ...

open research

A discussion about Open Access

3 minute read

Last week, Richard Poynder (@RickyPo on Twitter) organised an informal get together around open access (OA), that was attended by researchers, publishers and...

I won’t be Bullied Into Bad Science!

6 minute read

This is the content of my talk at OpenConCam, the OpenCon satellite meeting in Cambridge, presented on the 16 November 2017. The slides are available here.

Supporting those that support Open Research

6 minute read

The Office of Scholarly Communication (OSC) is the main structure that focuses on all matters related to open research at the University of Cambridge. It sta...

Research outputs management plans

1 minute read

During the talk about early career researchers’ view on modern and open scholarship I presented at the Research Data Management Forum 2017 in London, I descr...

Open science and open science

3 minute read

A recent discussion on twitter about Open Sciences made me think about how Open Science can be intimidating, alienating and unwelcoming at times.

Open Research Project, first thoughts

6 minute read

I am proud to be one of the participants in the Wellcome Trust Open Research Project (and here). The call was initially opened in December 2016 and was pitch...

open science

A discussion about Open Access

3 minute read

Last week, Richard Poynder (@RickyPo on Twitter) organised an informal get together around open access (OA), that was attended by researchers, publishers and...

I won’t be Bullied Into Bad Science!

6 minute read

This is the content of my talk at OpenConCam, the OpenCon satellite meeting in Cambridge, presented on the 16 November 2017. The slides are available here.

September data champions meeting

5 minute read

The Data Champions Initiative was set up as a way to promote best practice in terms of data management within the University departments and institutes, and ...

Open science and open science

3 minute read

A recent discussion on twitter about Open Sciences made me think about how Open Science can be intimidating, alienating and unwelcoming at times.

Open Research Project, first thoughts

6 minute read

I am proud to be one of the participants in the Wellcome Trust Open Research Project (and here). The call was initially opened in December 2016 and was pitch...

Authorship, trust and open science

4 minute read

The publish or perish crisis has led to a situation where, quite understandably, being named on a paper is more important than the actual contribution. As a ...

pRoloc

peer review

September data champions meeting

5 minute read

The Data Champions Initiative was set up as a way to promote best practice in terms of data management within the University departments and institutes, and ...

pre-prints

predatory publishing

programming

The Fibonacci Sequence

4 minute read

Here’s another post inspired by some python code, this time about the Fibonacci sequence by Stuart Mumford.

The steep learning curve

2 minute read

TL;DR The bloody steep learning curve is just a silly excuse and will only result in keeping [computer|programming|stats|…] literacy low in life sciences. St...

Git Svn

2 minute read

From my old Git(hub) notes…

proteomics

Some brief advice on data analysis

3 minute read

Following up from the Quantitative Proteomics and Data Analysis course, where in animated a discussion table about Inspection, visualisation and analysis of ...

python

The Fibonacci Sequence

4 minute read

Here’s another post inspired by some python code, this time about the Fibonacci sequence by Stuart Mumford.

reproducible research

research data

science

Authorship, trust and open science

4 minute read

The publish or perish crisis has led to a situation where, quite understandably, being named on a paper is more important than the actual contribution. As a ...

The steep learning curve

2 minute read

TL;DR The bloody steep learning curve is just a silly excuse and will only result in keeping [computer|programming|stats|…] literacy low in life sciences. St...

software

Research outputs management plans

1 minute read

During the talk about early career researchers’ view on modern and open scholarship I presented at the Research Data Management Forum 2017 in London, I descr...

spatial

svn

Git Svn

2 minute read

From my old Git(hub) notes…

talk

September data champions meeting

5 minute read

The Data Champions Initiative was set up as a way to promote best practice in terms of data management within the University departments and institutes, and ...

talks

teaching

A gentle introduction to git and Github

10 minute read

Git is a command line-based distributed version control system. Version control system means that its goal is to track and record every change in a set of te...

Some brief advice on data analysis

3 minute read

Following up from the Quantitative Proteomics and Data Analysis course, where in animated a discussion table about Inspection, visualisation and analysis of ...